Hotels in Lincoln County

Crow's Nest @ The Thistle Inn

Indulge in luxury at The Thistle Inn, Boothbay Harbor. Our expansive Inn Suite offers two floors of refined elegance for families and groups. Relax in the regal master bedroom or the spacious living area with a sleeper sofa. Enjoy coastal inspired décor and ample natural light. A fully equipped kitchen awaits culinary enthusiasts. Two twin beds ensure comfort for companions, with modern bathrooms for convenience. Experience extraordinary hospitality where every detail exceeds expectations.

Cozy & Stylish | Premium Double Room Near Downtown

Discover comfort and convenience at Flagship Inn & Suites. Our first-floor, non-smoking room features two double beds and a full bath, offering a relaxing, pet-friendly retreat. Enjoy modern amenities, including complimentary Wi-Fi, TV, air conditioning, microwave, mini-refrigerator, and coffee maker. Start your day with a complimentary continental breakfast. Thoughtfully designed for your comfort, our accommodations ensure a memorable stay where relaxation meets exceptional hospitality.

Boothbay Harbor Ocean View Garden Suite!

Room 9 at Admiral's Quarters Inn – Cozy Harbor View Room in Boothbay Harbor Room 9 offers a private ground-floor entrance with no steps, stunning harbor views, and direct access to gardens. Relax on your private patio in Maine rockers, soak in the sea breeze, and watch harbor life. The room includes a queen bed, fireplace, mini fridge, and a compact bathroom. Perfect for a peaceful getaway. Book today for a charming stay in Boothbay Harbor, Maine!

Admiral’s Quarters 14 –Penthouse King Suite, VIEWS

Admiral’s Quarters Room 14 is a premium 2-room penthouse suite with stunning harbor, lighthouse, and ocean views. The king bedroom features a wall of windows, private balcony, and fireplace. A second room offers a twin trundle bed and built-in storage with a mini fridge. Enjoy a walk-in glass shower and two entrances—one private. Perfect for couples or small groups seeking a scenic, quiet retreat in Boothbay Harbor.

Greenleaf Inn 1 King Suite, Balcony, Harbor View

A bright, cheery and spacious room located on the first floor of the main house. This room has nice views out toward the islands, lighthouses and open ocean as well as a private balcony that overlooks the inner harbor and Commercial Street. This room has a king sized bed, heat, air-conditioning, alarm clock, fan, 43 Smart TV, and ambient lighting. This room has a full private bathroom with tub/shower combination.

GL6 | Private King, Harbor Views, Large Balcony!

Cozy and private, Room 6 at the Greenleaf Inn offers a king bed, private outdoor entrance, and a covered balcony with table and chairs overlooking Boothbay Harbor. Includes a coffee/tea setup, spacious closet, and full bathroom with tub/shower. Enjoy stunning ocean views or relax across the lot in the Admiral’s Quarters solarium. Steps from shops, dining, and boat tours—perfect for a peaceful Maine getaway.

Main Inn Harbor View

This two-room two queen bed handicap accessible unit is located on the second floor (street level, no stairs) of our Main Inn Building with a private double balcony at the Tugboat Inn. Along with beautiful views of the harbor, we also have an onsite restaurant with all your seafood and land favorites! We are also walking distance from downtown Boothbay Harbor where you can enjoy many shops and restaurants.

Premier Ocean View 2 Room King Suite Patio

Admiral’s Quarters Room 13 is a spacious, first-floor king suite with stunning views of Boothbay Harbor, two lighthouses, and the ocean beyond. French doors open to a private balcony off the salon-style living room with a fireplace, reading nook, and dining area. The adjoining king bedroom and private bath offer peace and comfort. Quiet, charming, and perfect for a romantic getaway on the Maine coast.

Alyson's Room - Main House King, Ocean Views!

Bright and spacious, Greenleaf Inn Room 5 features ocean views, a king Helix mattress, smart-charging lamps, and a cozy reading chair. Enjoy personalized comfort with A/C, heat, and a ceiling fan. The large private bathroom includes plush towels and robes. Located in the main house, just a short walk to Boothbay Harbor’s shops, dining, and waterfront attractions—perfect for a peaceful Maine getaway.

More then a Motel with Garden

Welcome to our tranquil hotel with lush gardens and newly renovated rooms, offering a blend of modern comfort and style. Explore our town through our partnerships with a cozy coffee and bakery shop, a top-notch seafood and sushi restaurant, and an exclusive ice cream factory, all offering our guests special discounts. Experience hospitality intertwined with local flavors for an unforgettable stay.

GL4 | Corner King w/ Harbor & Island Views!

Relax in this bright, second-floor King room at the Greenleaf Inn with sweeping views of Boothbay Harbor and nearby islands. Enjoy a plush pillow-top bed, sitting area, closet, A/C, and ceiling fan. The private bath features a large shower, soft towels, and cozy robes. Located just steps from downtown shops, restaurants, and waterfront activities—perfect for a peaceful coastal getaway.

Ocean Deck Rm | Lighthouse View | No Hidden Fees

Holland Room 2 honors Spruce Point’s legacy with serene ocean views and timeless style. Featuring two queen beds and a pine-paneled bath, this second-floor guestroom opens to an airy deck overlooking Burnt Island Lighthouse. French doors, curated décor, and cozy comforts make it perfect for friends or families seeking a coastal Maine experience with history.